What this is
------------
The exact folder a client receives from a standard single-cell project, produced by our pipeline from a public
dataset (10x Genomics PBMC 3k) so that it can be shared.

  figures/            publication-resolution figures (300 dpi)
  tables/             cluster markers, cell-type composition, QC summary
  report.pdf          the analysis report, including a methods paragraph written for a manuscript
  run_manifest.json   inputs, parameters, software versions and per-step timings

Not in this download: processed.h5ad (46 MB here). Real deliveries always include it — it is the object your
team continues working from.

Between-group testing is absent on purpose: this example carries no subject or group information, and we do not
run group comparisons with cells as the unit of replication. Supply a sample sheet with a subject column and the
comparison is computed on pseudobulk profiles aggregated per subject.

omics.sinogenomics.com
